.. pIMZ documentation master file, created by
   sphinx-quickstart on Wed Oct  7 21:18:26 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to pIMZ's documentation!
================================

pIMZ is a framework for python-based Imaging Mass Spectrometry (IMS) data analysis.

pIMZ focuses on a differential setting, where masses, specific to certain areas are obtained, which then serve as input for a cell-type detection framework and/or a differential expression setting.


.. toctree::
   :caption: Contents:
   :glob:

   ../*
   usage.rst


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`